Changes between Version 61 and Version 62 of BigCompute


Ignore:
Timestamp:
Mar 9, 2011 9:49:23 AM (7 years ago)
Author:
schaik
Comment:

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  • BigCompute

    v61 v62  
    6363=== Data ===
    6464
    65 Browse to the following directory with the Vbrowser (this directory is only readable/writable for the gvnl group):
    66 lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/Results-test20101220
     65The data is located on the storage element at Sara and only readable and writable for the vlemed/gvnl group. This screencast demonstrates how to access the data from the Vbrowser:
     66http://www.youtube.com/watch?v=FicwWGAbubQ
    6767
    68 Each component in the workflow generates a new sub directory.
     68Storage location (resource): srm.grid.sara.nl
    6969
    70 If you would like to retrieve the analysis results of the picard-qc component of one of the samples, you go to the directory:
    71 * bwa_databasename_parametername/samplename_libraryname_lanename/picard1.32qc/
    72 * Example: lfn://lfc.grid.sara.nl:5010/grid/vlemed/gvnl/Data/bwa_gatk_index_basespace_human_g1k_v37.fasta.tar.gz_bwa_4_threads.txt/A4a_HUModqRBVDIBAPE_L7
    73 
    74 The results for the analysis where we have splitted the fastq-files is located in the directories that start with:
    75 * split_fileprefix_1/
    76 
    77 '''Note that not everything is there yet and that the data structure may change, since we are still testing.'''
     70Path: /pnfs/grid.sara.nl/data/vlemed/gvnl
    7871
    7972=== Workflows and databases ===