Changes between Version 43 and Version 44 of ImputationPipeline


Ignore:
Timestamp:
Dec 6, 2011 1:17:11 PM (6 years ago)
Author:
a.kanterakis
Comment:

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  • ImputationPipeline

    v43 v44  
    8484* MACH: http://www.sph.umich.edu/csg/abecasis/MACH/
    8585* Impute2: http://mathgen.stats.ox.ac.uk/impute/impute_v2.html
     86* GATK and Interface with BEAGLE imputation software. http://www.broadinstitute.org/gsa/wiki/index.php/Interface_with_BEAGLE_imputation_software
     87* https://sites.google.com/site/hickeyjohn/alphaphase. A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068938/?tool=pubmed
     88* ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing http://www.scfbm.org/content/6/1/10/abstract . A parallel version of ParaHaplo 3.0 can conduct genotype imputation 20 times faster than a non-parallel version of ParaHaplo.
     89* HLA*IMP—an integrated framework for imputing classical HLA alleles from SNP genotypes. http://bioinformatics.oxfordjournals.org/content/27/7/968.short?rss=1
     90* https://sites.google.com/site/hickeyjohn/alphaphase A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068938/?tool=pubmed