wiki:ImputationPipeline

Version 2 (modified by mswertz, 9 years ago) (diff)

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Imputation pipeline

There are at the moment two collaborating initiatives:

  • VU: Mathijs Kattenberg and Joukejan Hottenga using IMPUTE
  • UMCG: Lude Franke, Harm-Jan Westra, George Byelas, Morris Swertz using Beagle

The objective is to bring these pipelines into the same space so they can be properly compared and optimized.

TODO: describe the protocols here;

IMPUTE pipeline

TODO: paste shell script descriptions of each step.

BEABLE pipeline

TODO: paste shell script descriptions of each step