Changes between Version 8 and Version 9 of SnpCallingPipeline/AlignmentAndCleaning


Ignore:
Timestamp:
Oct 19, 2010 8:15:48 PM (8 years ago)
Author:
mswertz
Comment:

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  • SnpCallingPipeline/AlignmentAndCleaning

    v8 v9  
    5757
    5858== sam-sort ==
    59 Sort bam file on coordinate
     59Sort and index bam file on coordinate
    6060
    61 ||tool:    ||samtools sort ||
     61||tool:    ||samtools sort + index ||
    6262||inputs:  ||lane.chr.bam ||
    63 ||outputs: ||lane.chr.sorted.bam ||
    64 ||docs:    ||http://samtools.sourceforge.net/samtools.shtml ||
    65 
    66 == sam-index ==
    67 Index bam file for quicker access
    68 
    69 ||tool:    ||samtools index ||
    70 ||inputs:  ||lane.chr.sorted.bam ||
    71 ||outputs: ||lane.chr.sorted.bai ||
     63||outputs: ||lane.chr.sorted.bam [[BR]]lane.chr.sorted.ba ||
    7264||docs:    ||http://samtools.sourceforge.net/samtools.shtml ||
    7365